From 35ba166d7a7c9856451f98bf305dba26331ab716 Mon Sep 17 00:00:00 2001
From: "Kurt A. O'Hearn" <ohearnku@msu.edu>
Date: Sun, 12 Jun 2016 21:33:21 -0400
Subject: [PATCH] Fix CUDA build rules. Remove generated headers. Update
.gitignore.
---
.gitignore | 6 +-
puremd_rc_1003/PG-PuReMD/Makefile.am | 16 ++--
puremd_rc_1003/PG-PuReMD/configure.ac | 3 +-
puremd_rc_1003/PG-PuReMD/cuda.am | 10 +--
puremd_rc_1003/PG-PuReMD/src/config.h | 91 -----------------------
puremd_rc_1003/PG-PuReMD/src/config.h.in | 93 ------------------------
puremd_rc_1003/PuReMD/src/config.h | 91 -----------------------
puremd_rc_1003/PuReMD/src/config.h.in | 90 -----------------------
puremd_rc_1003/configure.ac | 4 +-
puremd_rc_1003/sPuReMD/src/config.h | 78 --------------------
puremd_rc_1003/sPuReMD/src/config.h.in | 77 --------------------
11 files changed, 20 insertions(+), 539 deletions(-)
delete mode 100644 puremd_rc_1003/PG-PuReMD/src/config.h
delete mode 100644 puremd_rc_1003/PG-PuReMD/src/config.h.in
delete mode 100644 puremd_rc_1003/PuReMD/src/config.h
delete mode 100644 puremd_rc_1003/PuReMD/src/config.h.in
delete mode 100644 puremd_rc_1003/sPuReMD/src/config.h
delete mode 100644 puremd_rc_1003/sPuReMD/src/config.h.in
diff --git a/.gitignore b/.gitignore
index 8ca7ec02..280cf9b1 100644
--- a/.gitignore
+++ b/.gitignore
@@ -31,15 +31,19 @@
aclocal.m4
autom4te.cache
.deps
-stamp-h1
+.dirstamp
+confdefs.h
config.log
config.guess
+config.h
+config.h.in
config.status
config.sub
configure
libtool
Makefile
Makefile.in
+stamp-h1
# Compiled languages (C,C++,Fortran,...)
*.o
diff --git a/puremd_rc_1003/PG-PuReMD/Makefile.am b/puremd_rc_1003/PG-PuReMD/Makefile.am
index ba8fe5af..f39c038a 100644
--- a/puremd_rc_1003/PG-PuReMD/Makefile.am
+++ b/puremd_rc_1003/PG-PuReMD/Makefile.am
@@ -24,13 +24,11 @@ NVCCFLAGS += --compiler-options -fno-strict-aliasing
NVCCFLAGS += --compiler-options -Wno-unused-function
NVCCFLAGS += --compiler-options -Wno-unused-parameter
NVCCFLAGS += --compiler-options "$(MPI_CFLAGS)"
-
-#NVCC_LIBS = -lcudart -m64
endif
-bin_PROGRAMS = pg-puremd
-pg_puremd_SOURCES = src/allocate.c src/basic_comm.c src/ffield.c src/grid.c src/list.c \
+bin_PROGRAMS = src/pg-puremd
+src_pg_puremd_SOURCES = src/allocate.c src/basic_comm.c src/ffield.c src/grid.c src/list.c \
src/lookup.c src/io_tools.c src/reset_tools.c src/restart.c src/random.c \
src/tool_box.c src/traj.c src/vector.c src/analyze.c src/box.c src/system_props.c \
src/control.c src/comm_tools.c src/geo_tools.c src/linear_solvers.c src/neighbors.c \
@@ -39,7 +37,7 @@ pg_puremd_SOURCES = src/allocate.c src/basic_comm.c src/ffield.c src/grid.c src/
src/integrate.c src/init_md.c src/parallelreax.c
if BUILD_CUDA
-pg_puremd_SOURCES += src/cuda_utils.cu src/dev_alloc.cu src/cuda_environment.cu \
+src_pg_puremd_SOURCES += src/cuda_utils.cu src/dev_alloc.cu src/cuda_environment.cu \
src/dev_system_props.cu src/reduction.cu src/center_mass.cu \
src/cuda_copy.cu src/cuda_reset_tools.cu src/dev_list.cu \
src/cuda_neighbors.cu src/cuda_bond_orders.cu src/cuda_bonds.cu \
@@ -50,13 +48,13 @@ pg_puremd_SOURCES += src/cuda_utils.cu src/dev_alloc.cu src/cuda_environment.cu
src/cuda_init_md.cu src/validation.cu src/cuda_lookup.cu
# dummy source to cause C linking
-nodist_EXTRA_pg_puremd_SOURCES = src/dummy.c
+nodist_EXTRA_src_pg_puremd_SOURCES = src/dummy.c
endif
-pg_puremd_CFLAGS = $(AM_CFLAGS) $(MPI_CFLAGS)
-pg_puremd_LDFLAGS = $(AM_LDFLAGS) $(MPI_LDFLAGS)
+src_pg_puremd_CFLAGS = $(AM_CFLAGS) $(MPI_CFLAGS)
+src_pg_puremd_LDFLAGS = $(AM_LDFLAGS) $(MPI_LDFLAGS)
if BUILD_CUDA
- pg_puremd_LDFLAGS += $(CUDA_LIBS)
+src_pg_puremd_LDFLAGS += $(CUDA_LIBS)
endif
diff --git a/puremd_rc_1003/PG-PuReMD/configure.ac b/puremd_rc_1003/PG-PuReMD/configure.ac
index a19927d0..5a121aac 100644
--- a/puremd_rc_1003/PG-PuReMD/configure.ac
+++ b/puremd_rc_1003/PG-PuReMD/configure.ac
@@ -51,11 +51,10 @@ AC_CHECK_FUNCS([gettimeofday memset])
if test "x$BUILD_GPU" = "xyes"; then
CONFIGURE_HEADLINE([ CUDA support ])
AX_CUDA
+ NVCCFLAGS=
if test "BUILD_DEBUG" = "true"
then
NVCCFLAGS+=" -g -G"
- else
- NVCCFLAGS+=" -O3"
fi
AC_DEFINE([HAVE_CUDA], [1], [Define to 1 if you have CUDA support enabled.])
diff --git a/puremd_rc_1003/PG-PuReMD/cuda.am b/puremd_rc_1003/PG-PuReMD/cuda.am
index bae249b6..e5e86003 100644
--- a/puremd_rc_1003/PG-PuReMD/cuda.am
+++ b/puremd_rc_1003/PG-PuReMD/cuda.am
@@ -5,14 +5,14 @@
# in autotroll.am)
#SUFFIXES = .cu
+AM_V_NVCC = $(AM_V_NVCC_@AM_V@)
+AM_V_NVCC_ = $(AM_V_NVCC_@AM_DEFAULT_V@)
+AM_V_NVCC_0 = @echo " NVCC" $@;
+
# these are default values for the maximun register count parameter
# passed to nvcc compiler (you might need to change it sometimes; all you need
# is to set it as an environment variable).
MAX_REG_COUNT ?=48
.cu.o:
- $(AM_V_GEN)$(NVCC) $(NVCCFLAGS) -maxrregcount=$(MAX_REG_COUNT) -o $@ -c $<
-.cu.lo:
- $(AM_V_GEN)$(top_srcdir)/am/cudalt.py $@ $(NVCC) $(NVCCFLAGS) -maxrregcount=$(MAX_REG_COUNT) -c $<
-.cu.c:
- $(AM_V_GEN)cp $< $@
+ $(AM_V_NVCC)$(NVCC) $(NVCCFLAGS) -maxrregcount=$(MAX_REG_COUNT) -o $@ -c $<
diff --git a/puremd_rc_1003/PG-PuReMD/src/config.h b/puremd_rc_1003/PG-PuReMD/src/config.h
deleted file mode 100644
index e78fc499..00000000
--- a/puremd_rc_1003/PG-PuReMD/src/config.h
+++ /dev/null
@@ -1,91 +0,0 @@
-/* src/config.h. Generated from config.h.in by configure. */
-/* src/config.h.in. Generated from configure.ac by autoheader. */
-
-/* Define to 1 if you have the `gettimeofday' function. */
-#define HAVE_GETTIMEOFDAY 1
-
-/* Define to 1 if you have the <inttypes.h> header file. */
-#define HAVE_INTTYPES_H 1
-
-/* Define to 1 if your system has a GNU libc compatible `malloc' function, and
- to 0 otherwise. */
-#define HAVE_MALLOC 1
-
-/* Define to 1 if you have the <memory.h> header file. */
-#define HAVE_MEMORY_H 1
-
-/* Define to 1 if you have the `memset' function. */
-#define HAVE_MEMSET 1
-
-/* Define if you have the MPI library. */
-#define HAVE_MPI 1
-
-/* Define to 1 if your system has a GNU libc compatible `realloc' function,
- and to 0 otherwise. */
-#define HAVE_REALLOC 1
-
-/* Define to 1 if you have the <stdint.h> header file. */
-#define HAVE_STDINT_H 1
-
-/* Define to 1 if you have the <stdlib.h> header file. */
-#define HAVE_STDLIB_H 1
-
-/* Define to 1 if you have the <strings.h> header file. */
-#define HAVE_STRINGS_H 1
-
-/* Define to 1 if you have the <string.h> header file. */
-#define HAVE_STRING_H 1
-
-/* Define to 1 if you have the <sys/stat.h> header file. */
-#define HAVE_SYS_STAT_H 1
-
-/* Define to 1 if you have the <sys/types.h> header file. */
-#define HAVE_SYS_TYPES_H 1
-
-/* Define to 1 if you have the <unistd.h> header file. */
-#define HAVE_UNISTD_H 1
-
-/* Define to 1 if the system has the type `_Bool'. */
-#define HAVE__BOOL 1
-
-/* Name of package */
-#define PACKAGE "pg-puremd"
-
-/* Define to the address where bug reports for this package should be sent. */
-#define PACKAGE_BUGREPORT "ohearnku@msu.edu hma@msu.edu"
-
-/* Define to the full name of this package. */
-#define PACKAGE_NAME "PG-PuReMD"
-
-/* Define to the full name and version of this package. */
-#define PACKAGE_STRING "PG-PuReMD 1.0"
-
-/* Define to the one symbol short name of this package. */
-#define PACKAGE_TARNAME "pg-puremd"
-
-/* Define to the home page for this package. */
-#define PACKAGE_URL ""
-
-/* Define to the version of this package. */
-#define PACKAGE_VERSION "1.0"
-
-/* Define to 1 if you have the ANSI C header files. */
-#define STDC_HEADERS 1
-
-/* Version number of package */
-#define VERSION "1.0"
-
-/* Define to `__inline__' or `__inline' if that's what the C compiler
- calls it, or to nothing if 'inline' is not supported under any name. */
-#ifndef __cplusplus
-/* #undef inline */
-#endif
-
-/* Define to rpl_malloc if the replacement function should be used. */
-/* #undef malloc */
-
-/* Define to rpl_realloc if the replacement function should be used. */
-/* #undef realloc */
-
-/* Define to `unsigned int' if <sys/types.h> does not define. */
-/* #undef size_t */
diff --git a/puremd_rc_1003/PG-PuReMD/src/config.h.in b/puremd_rc_1003/PG-PuReMD/src/config.h.in
deleted file mode 100644
index c3cec655..00000000
--- a/puremd_rc_1003/PG-PuReMD/src/config.h.in
+++ /dev/null
@@ -1,93 +0,0 @@
-/* src/config.h.in. Generated from configure.ac by autoheader. */
-
-/* Define to 1 if you have CUDA support enabled. */
-#undef HAVE_CUDA
-
-/* Define to 1 if you have the `gettimeofday' function. */
-#undef HAVE_GETTIMEOFDAY
-
-/* Define to 1 if you have the <inttypes.h> header file. */
-#undef HAVE_INTTYPES_H
-
-/* Define to 1 if your system has a GNU libc compatible `malloc' function, and
- to 0 otherwise. */
-#undef HAVE_MALLOC
-
-/* Define to 1 if you have the <memory.h> header file. */
-#undef HAVE_MEMORY_H
-
-/* Define to 1 if you have the `memset' function. */
-#undef HAVE_MEMSET
-
-/* Define if you have the MPI library. */
-#undef HAVE_MPI
-
-/* Define to 1 if your system has a GNU libc compatible `realloc' function,
- and to 0 otherwise. */
-#undef HAVE_REALLOC
-
-/* Define to 1 if you have the <stdint.h> header file. */
-#undef HAVE_STDINT_H
-
-/* Define to 1 if you have the <stdlib.h> header file. */
-#undef HAVE_STDLIB_H
-
-/* Define to 1 if you have the <strings.h> header file. */
-#undef HAVE_STRINGS_H
-
-/* Define to 1 if you have the <string.h> header file. */
-#undef HAVE_STRING_H
-
-/* Define to 1 if you have the <sys/stat.h> header file. */
-#undef HAVE_SYS_STAT_H
-
-/* Define to 1 if you have the <sys/types.h> header file. */
-#undef HAVE_SYS_TYPES_H
-
-/* Define to 1 if you have the <unistd.h> header file. */
-#undef HAVE_UNISTD_H
-
-/* Define to 1 if the system has the type `_Bool'. */
-#undef HAVE__BOOL
-
-/* Name of package */
-#undef PACKAGE
-
-/* Define to the address where bug reports for this package should be sent. */
-#undef PACKAGE_BUGREPORT
-
-/* Define to the full name of this package. */
-#undef PACKAGE_NAME
-
-/* Define to the full name and version of this package. */
-#undef PACKAGE_STRING
-
-/* Define to the one symbol short name of this package. */
-#undef PACKAGE_TARNAME
-
-/* Define to the home page for this package. */
-#undef PACKAGE_URL
-
-/* Define to the version of this package. */
-#undef PACKAGE_VERSION
-
-/* Define to 1 if you have the ANSI C header files. */
-#undef STDC_HEADERS
-
-/* Version number of package */
-#undef VERSION
-
-/* Define to `__inline__' or `__inline' if that's what the C compiler
- calls it, or to nothing if 'inline' is not supported under any name. */
-#ifndef __cplusplus
-#undef inline
-#endif
-
-/* Define to rpl_malloc if the replacement function should be used. */
-#undef malloc
-
-/* Define to rpl_realloc if the replacement function should be used. */
-#undef realloc
-
-/* Define to `unsigned int' if <sys/types.h> does not define. */
-#undef size_t
diff --git a/puremd_rc_1003/PuReMD/src/config.h b/puremd_rc_1003/PuReMD/src/config.h
deleted file mode 100644
index f210eabd..00000000
--- a/puremd_rc_1003/PuReMD/src/config.h
+++ /dev/null
@@ -1,91 +0,0 @@
-/* src/config.h. Generated from config.h.in by configure. */
-/* src/config.h.in. Generated from configure.ac by autoheader. */
-
-/* Define to 1 if you have the `gettimeofday' function. */
-#define HAVE_GETTIMEOFDAY 1
-
-/* Define to 1 if you have the <inttypes.h> header file. */
-#define HAVE_INTTYPES_H 1
-
-/* Define to 1 if your system has a GNU libc compatible `malloc' function, and
- to 0 otherwise. */
-#define HAVE_MALLOC 1
-
-/* Define to 1 if you have the <memory.h> header file. */
-#define HAVE_MEMORY_H 1
-
-/* Define to 1 if you have the `memset' function. */
-#define HAVE_MEMSET 1
-
-/* Define if you have the MPI library. */
-#define HAVE_MPI 1
-
-/* Define to 1 if you have the `pow' function. */
-#define HAVE_POW 1
-
-/* Define to 1 if your system has a GNU libc compatible `realloc' function,
- and to 0 otherwise. */
-#define HAVE_REALLOC 1
-
-/* Define to 1 if you have the `sqrt' function. */
-#define HAVE_SQRT 1
-
-/* Define to 1 if you have the <stdint.h> header file. */
-#define HAVE_STDINT_H 1
-
-/* Define to 1 if you have the <stdlib.h> header file. */
-#define HAVE_STDLIB_H 1
-
-/* Define to 1 if you have the <strings.h> header file. */
-#define HAVE_STRINGS_H 1
-
-/* Define to 1 if you have the <string.h> header file. */
-#define HAVE_STRING_H 1
-
-/* Define to 1 if you have the <sys/stat.h> header file. */
-#define HAVE_SYS_STAT_H 1
-
-/* Define to 1 if you have the <sys/types.h> header file. */
-#define HAVE_SYS_TYPES_H 1
-
-/* Define to 1 if you have the <unistd.h> header file. */
-#define HAVE_UNISTD_H 1
-
-/* Name of package */
-#define PACKAGE "puremd"
-
-/* Define to the address where bug reports for this package should be sent. */
-#define PACKAGE_BUGREPORT "ohearnku@msu.edu hma@msu.edu"
-
-/* Define to the full name of this package. */
-#define PACKAGE_NAME "PuReMD"
-
-/* Define to the full name and version of this package. */
-#define PACKAGE_STRING "PuReMD 1.0"
-
-/* Define to the one symbol short name of this package. */
-#define PACKAGE_TARNAME "puremd"
-
-/* Define to the home page for this package. */
-#define PACKAGE_URL ""
-
-/* Define to the version of this package. */
-#define PACKAGE_VERSION "1.0"
-
-/* Define to 1 if you have the ANSI C header files. */
-#define STDC_HEADERS 1
-
-/* Version number of package */
-#define VERSION "1.0"
-
-/* Define to `__inline__' or `__inline' if that's what the C compiler
- calls it, or to nothing if 'inline' is not supported under any name. */
-#ifndef __cplusplus
-/* #undef inline */
-#endif
-
-/* Define to rpl_malloc if the replacement function should be used. */
-/* #undef malloc */
-
-/* Define to rpl_realloc if the replacement function should be used. */
-/* #undef realloc */
diff --git a/puremd_rc_1003/PuReMD/src/config.h.in b/puremd_rc_1003/PuReMD/src/config.h.in
deleted file mode 100644
index 857484c9..00000000
--- a/puremd_rc_1003/PuReMD/src/config.h.in
+++ /dev/null
@@ -1,90 +0,0 @@
-/* src/config.h.in. Generated from configure.ac by autoheader. */
-
-/* Define to 1 if you have the `gettimeofday' function. */
-#undef HAVE_GETTIMEOFDAY
-
-/* Define to 1 if you have the <inttypes.h> header file. */
-#undef HAVE_INTTYPES_H
-
-/* Define to 1 if your system has a GNU libc compatible `malloc' function, and
- to 0 otherwise. */
-#undef HAVE_MALLOC
-
-/* Define to 1 if you have the <memory.h> header file. */
-#undef HAVE_MEMORY_H
-
-/* Define to 1 if you have the `memset' function. */
-#undef HAVE_MEMSET
-
-/* Define if you have the MPI library. */
-#undef HAVE_MPI
-
-/* Define to 1 if you have the `pow' function. */
-#undef HAVE_POW
-
-/* Define to 1 if your system has a GNU libc compatible `realloc' function,
- and to 0 otherwise. */
-#undef HAVE_REALLOC
-
-/* Define to 1 if you have the `sqrt' function. */
-#undef HAVE_SQRT
-
-/* Define to 1 if you have the <stdint.h> header file. */
-#undef HAVE_STDINT_H
-
-/* Define to 1 if you have the <stdlib.h> header file. */
-#undef HAVE_STDLIB_H
-
-/* Define to 1 if you have the <strings.h> header file. */
-#undef HAVE_STRINGS_H
-
-/* Define to 1 if you have the <string.h> header file. */
-#undef HAVE_STRING_H
-
-/* Define to 1 if you have the <sys/stat.h> header file. */
-#undef HAVE_SYS_STAT_H
-
-/* Define to 1 if you have the <sys/types.h> header file. */
-#undef HAVE_SYS_TYPES_H
-
-/* Define to 1 if you have the <unistd.h> header file. */
-#undef HAVE_UNISTD_H
-
-/* Name of package */
-#undef PACKAGE
-
-/* Define to the address where bug reports for this package should be sent. */
-#undef PACKAGE_BUGREPORT
-
-/* Define to the full name of this package. */
-#undef PACKAGE_NAME
-
-/* Define to the full name and version of this package. */
-#undef PACKAGE_STRING
-
-/* Define to the one symbol short name of this package. */
-#undef PACKAGE_TARNAME
-
-/* Define to the home page for this package. */
-#undef PACKAGE_URL
-
-/* Define to the version of this package. */
-#undef PACKAGE_VERSION
-
-/* Define to 1 if you have the ANSI C header files. */
-#undef STDC_HEADERS
-
-/* Version number of package */
-#undef VERSION
-
-/* Define to `__inline__' or `__inline' if that's what the C compiler
- calls it, or to nothing if 'inline' is not supported under any name. */
-#ifndef __cplusplus
-#undef inline
-#endif
-
-/* Define to rpl_malloc if the replacement function should be used. */
-#undef malloc
-
-/* Define to rpl_realloc if the replacement function should be used. */
-#undef realloc
diff --git a/puremd_rc_1003/configure.ac b/puremd_rc_1003/configure.ac
index 6e1f16a4..6a04a17f 100644
--- a/puremd_rc_1003/configure.ac
+++ b/puremd_rc_1003/configure.ac
@@ -59,9 +59,9 @@ AM_CONDITIONAL([BUILD_GPU], [test "x${package_gpu_enabled}" = "xyes"])
if test "x${package_mpi_not_gpu_enabled}" = "xyes" || test "x${package_mpi_gpu_enabled}" = "xyes"; then
AC_CONFIG_SUBDIRS([PG-PuReMD])
if test "x${package_mpi_not_gpu_enabled}" = "xyes" || test "x${package_mpi_gpu_enabled}" != "xyes"; then
- export BUILD_MPI_NOT_GPU="yes"
+ export BUILD_GPU="no"
else
- export BUILD_MPI_NOT_GPU="no"
+ export BUILD_GPU="yes"
fi
fi
AM_CONDITIONAL([BUILD_MPI_GPU], [test "x${package_mpi_not_gpu_enabled}" = "xyes" || test "x${package_mpi_gpu_enabled}" = "xyes"])
diff --git a/puremd_rc_1003/sPuReMD/src/config.h b/puremd_rc_1003/sPuReMD/src/config.h
deleted file mode 100644
index 93fd6151..00000000
--- a/puremd_rc_1003/sPuReMD/src/config.h
+++ /dev/null
@@ -1,78 +0,0 @@
-/* src/config.h. Generated from config.h.in by configure. */
-/* src/config.h.in. Generated from configure.ac by autoheader. */
-
-/* Define to 1 if you have the `gettimeofday' function. */
-#define HAVE_GETTIMEOFDAY 1
-
-/* Define to 1 if the system has the type `gzFile'. */
-#define HAVE_GZFILE 1
-
-/* Define to 1 if you have the <inttypes.h> header file. */
-#define HAVE_INTTYPES_H 1
-
-/* Define to 1 if your system has a GNU libc compatible `malloc' function, and
- to 0 otherwise. */
-#define HAVE_MALLOC 1
-
-/* Define to 1 if you have the <memory.h> header file. */
-#define HAVE_MEMORY_H 1
-
-/* Define to 1 if you have the `memset' function. */
-#define HAVE_MEMSET 1
-
-/* Define to 1 if you have the <stdint.h> header file. */
-#define HAVE_STDINT_H 1
-
-/* Define to 1 if you have the <stdlib.h> header file. */
-#define HAVE_STDLIB_H 1
-
-/* Define to 1 if you have the <strings.h> header file. */
-#define HAVE_STRINGS_H 1
-
-/* Define to 1 if you have the <string.h> header file. */
-#define HAVE_STRING_H 1
-
-/* Define to 1 if you have the <sys/stat.h> header file. */
-#define HAVE_SYS_STAT_H 1
-
-/* Define to 1 if you have the <sys/types.h> header file. */
-#define HAVE_SYS_TYPES_H 1
-
-/* Define to 1 if you have the <unistd.h> header file. */
-#define HAVE_UNISTD_H 1
-
-/* Name of package */
-#define PACKAGE "spuremd"
-
-/* Define to the address where bug reports for this package should be sent. */
-#define PACKAGE_BUGREPORT "ohearnku@msu.edu hma@msu.edu"
-
-/* Define to the full name of this package. */
-#define PACKAGE_NAME "sPuReMD"
-
-/* Define to the full name and version of this package. */
-#define PACKAGE_STRING "sPuReMD 1.0"
-
-/* Define to the one symbol short name of this package. */
-#define PACKAGE_TARNAME "spuremd"
-
-/* Define to the home page for this package. */
-#define PACKAGE_URL ""
-
-/* Define to the version of this package. */
-#define PACKAGE_VERSION "1.0"
-
-/* Define to 1 if you have the ANSI C header files. */
-#define STDC_HEADERS 1
-
-/* Version number of package */
-#define VERSION "1.0"
-
-/* Define to `__inline__' or `__inline' if that's what the C compiler
- calls it, or to nothing if 'inline' is not supported under any name. */
-#ifndef __cplusplus
-/* #undef inline */
-#endif
-
-/* Define to rpl_malloc if the replacement function should be used. */
-/* #undef malloc */
diff --git a/puremd_rc_1003/sPuReMD/src/config.h.in b/puremd_rc_1003/sPuReMD/src/config.h.in
deleted file mode 100644
index e6039861..00000000
--- a/puremd_rc_1003/sPuReMD/src/config.h.in
+++ /dev/null
@@ -1,77 +0,0 @@
-/* src/config.h.in. Generated from configure.ac by autoheader. */
-
-/* Define to 1 if you have the `gettimeofday' function. */
-#undef HAVE_GETTIMEOFDAY
-
-/* Define to 1 if the system has the type `gzFile'. */
-#undef HAVE_GZFILE
-
-/* Define to 1 if you have the <inttypes.h> header file. */
-#undef HAVE_INTTYPES_H
-
-/* Define to 1 if your system has a GNU libc compatible `malloc' function, and
- to 0 otherwise. */
-#undef HAVE_MALLOC
-
-/* Define to 1 if you have the <memory.h> header file. */
-#undef HAVE_MEMORY_H
-
-/* Define to 1 if you have the `memset' function. */
-#undef HAVE_MEMSET
-
-/* Define to 1 if you have the <stdint.h> header file. */
-#undef HAVE_STDINT_H
-
-/* Define to 1 if you have the <stdlib.h> header file. */
-#undef HAVE_STDLIB_H
-
-/* Define to 1 if you have the <strings.h> header file. */
-#undef HAVE_STRINGS_H
-
-/* Define to 1 if you have the <string.h> header file. */
-#undef HAVE_STRING_H
-
-/* Define to 1 if you have the <sys/stat.h> header file. */
-#undef HAVE_SYS_STAT_H
-
-/* Define to 1 if you have the <sys/types.h> header file. */
-#undef HAVE_SYS_TYPES_H
-
-/* Define to 1 if you have the <unistd.h> header file. */
-#undef HAVE_UNISTD_H
-
-/* Name of package */
-#undef PACKAGE
-
-/* Define to the address where bug reports for this package should be sent. */
-#undef PACKAGE_BUGREPORT
-
-/* Define to the full name of this package. */
-#undef PACKAGE_NAME
-
-/* Define to the full name and version of this package. */
-#undef PACKAGE_STRING
-
-/* Define to the one symbol short name of this package. */
-#undef PACKAGE_TARNAME
-
-/* Define to the home page for this package. */
-#undef PACKAGE_URL
-
-/* Define to the version of this package. */
-#undef PACKAGE_VERSION
-
-/* Define to 1 if you have the ANSI C header files. */
-#undef STDC_HEADERS
-
-/* Version number of package */
-#undef VERSION
-
-/* Define to `__inline__' or `__inline' if that's what the C compiler
- calls it, or to nothing if 'inline' is not supported under any name. */
-#ifndef __cplusplus
-#undef inline
-#endif
-
-/* Define to rpl_malloc if the replacement function should be used. */
-#undef malloc
--
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