diff --git a/tools/run_sim_puremd.py b/tools/run_sim_puremd.py index d1c84dec732161c6644efa2dfb0ee22912005ed8..cfb2f96c8e74f914f693b21b4554447738120f8e 100644 --- a/tools/run_sim_puremd.py +++ b/tools/run_sim_puremd.py @@ -309,8 +309,8 @@ if __name__ == '__main__': 'bilayer_56800', 'bilayer_340800', \ 'dna_19733', \ 'petn_48256', \ - 'silica_6000', 'silica_72000', 'silica_300000', \ - 'water_6540', 'water_78480', 'water_327000', \ + 'silica_6000', 'silica_72000', 'silica_300000', 'silica_5832000', \ + 'water_6540', 'water_78480', 'water_327000', 'water_6540000', \ ] parser = argparse.ArgumentParser(description='Run molecular dynamics simulations on specified data sets.') @@ -425,6 +425,15 @@ if __name__ == '__main__': result_header = header_str, result_body_fmt=body_fmt_str, geo_format=['0'], result_file=result_file, min_step=min_step, max_step=max_step)) + if 'water_6540000' in args.data: + test_cases.append( + TestCase(path.join(data_dir, 'water/water_6540000.geo'), + path.join(data_dir, 'water/ffield_acks2.water'), + path.join(control_dir, 'parallel_control'), + params=params, result_header_fmt=header_fmt_str, + result_header = header_str, result_body_fmt=body_fmt_str, + geo_format=['0'], result_file=result_file, + min_step=min_step, max_step=max_step)) if 'bilayer_56800' in args.data: test_cases.append( TestCase(path.join(data_dir, 'bilayer/bilayer_56800.pdb'), @@ -479,6 +488,15 @@ if __name__ == '__main__': result_header = header_str, result_body_fmt=body_fmt_str, geo_format=['0'], result_file=result_file, min_step=min_step, max_step=max_step)) + if 'silica_5832000' in args.data: + test_cases.append( + TestCase(path.join(data_dir, 'silica/silica_5832000.geo'), + path.join(data_dir, 'silica/ffield-bio'), + path.join(control_dir, 'parallel_control'), + params=params, result_header_fmt=header_fmt_str, + result_header = header_str, result_body_fmt=body_fmt_str, + geo_format=['0'], result_file=result_file, + min_step=min_step, max_step=max_step)) if 'petn_48256' in args.data: test_cases.append( TestCase(path.join(data_dir, 'petn/petn_48256.pdb'),