Commits · ca8bbe17eabca8013d895cb0a92e2da7e11d5037 · SParTA / PuReMD · GitLab

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Jun 16, 2016
- Fix bilayer and dna benchmarks. Add NaN support for checking sim box boundaries in PuReMD. · ca8bbe17
  Kurt A. O'Hearn authored 8 years ago
  
  ca8bbe17
- More benchmark changes. · b18467fd
  Kurt A. O'Hearn authored 8 years ago
  
  b18467fd
- Update benchmarks. · 1c247877
  Kurt A. O'Hearn authored 8 years ago
  
  1c247877
Jun 14, 2016
- Autotools: add support for compiling shared sources between NVCC and CC trajectories. · 3de10e33
  Kurt A. O'Hearn authored 8 years ago
  
  3de10e33
Jun 12, 2016
- Fix CUDA build rules. Remove generated headers. Update .gitignore. · 35ba166d
  Kurt A. O'Hearn authored 8 years ago
  
  35ba166d
- Enable silent builds for custom rules. · ed565fee
  Kurt A. O'Hearn authored 8 years ago
  
  ed565fee
- Autotools: enable silent builds by default. · 8eab3316
  Kurt A. O'Hearn authored 8 years ago
  
  8eab3316
- Refactor build system to conditionally enable CUDA support in PG-PuReMD. · 84822808
  Kurt A. O'Hearn authored 8 years ago
  
  84822808
Jun 09, 2016
- Remove b from shared clause: predetermined shared with recent GCC, which results in error. · a4a5aeff
  Kurt A. O'Hearn authored 8 years ago
  
  a4a5aeff
- Update .gitignore. · 11a72ccd
  Kurt A. O'Hearn authored 8 years ago
  
  11a72ccd
- Add CUDA support. · 7d60aa89
  Kurt A. O'Hearn authored 8 years ago
  
  7d60aa89
Jun 07, 2016
- Fix variable exporting to configure subdirs. Fix top level build options. Add MPI support. · 83df3063
  Kurt A. O'Hearn authored 8 years ago
  
  83df3063
Jun 03, 2016
- Add benchmark data. · aa94323b
  Kurt A. O'Hearn authored 8 years ago
  
  aa94323b
May 30, 2016
- Add MPI and CUDA builds. · 2ea46a11
  Kurt A. O'Hearn authored 8 years ago
  
  2ea46a11
May 19, 2016
- sPuReMD: more config parameter refactoring (Jacobi iterations). · b471f953
  Kurt A. O'Hearn authored 8 years ago
  
  b471f953
- sPuReMD: refactor config file options for QEq solver, preconditioner, etc. · b4aead31
  Kurt A. O'Hearn authored 8 years ago
  
  b4aead31
May 18, 2016
- sPuReMD: inline SpMV and vector addition in Jacobi iteration routine to avoid... · 6423101f
  Kurt A. O'Hearn authored 8 years ago
  
  sPuReMD: inline SpMV and vector addition in Jacobi iteration routine to avoid thread management overhead (per loop iteration).
  6423101f
- Refactor shared-memory parallelism. Add performance timing code for SpMV. · 3bbf2ba3
  Kurt A. O'Hearn authored 8 years ago
  
  3bbf2ba3
May 16, 2016
- Fix data permissions and .gitignore. · 4414c3af
  Kurt A. O'Hearn authored 8 years ago
  
  4414c3af
May 13, 2016
- Add data and tools. · b6d025b3
  Kurt A. O'Hearn authored 8 years ago
  
  b6d025b3
Apr 26, 2016
- sPuReMD: fix issues based on SpMV allocation/reduction based on thread number. · 830ffda6
  Kurt A. O'Hearn authored 8 years ago
  
  830ffda6
Apr 23, 2016
- Initial refactoring. Complete OpenMP port. Wrap existing MPI and CUDA makefiles. · 52df90fc
  Kurt A. O'Hearn authored 8 years ago
  
  52df90fc
Apr 18, 2016
- sPuReMD: add OpenMP header. · d72ee0eb
  Kurt A. O'Hearn authored 8 years ago
  
  d72ee0eb
- sPuReMD: decrease memory usage for thread-local SpMV buffers. · 69a25536
  Kurt A. O'Hearn authored 8 years ago
  
  69a25536
Apr 12, 2016
- sPuReMD: begin adding OpenMP support to SpMV, Jacobi iter, and ICHOL_PAR. · 4c09c5f1
  Kurt A. O'Hearn authored 8 years ago
  
  4c09c5f1
Mar 25, 2016
- sPuReMD: add preconditioning timing and analysis. · c416ab52
  Kurt A. O'Hearn authored 8 years ago
  
  c416ab52
- sPuReMD: add to print utils. · 7add25ac
  Kurt A. O'Hearn authored 8 years ago
  
  7add25ac
Mar 13, 2016
- sPuReMD: add cutoff-based ILU factor generation. · a544b061
  Kurt A. O'Hearn authored 9 years ago
  
  a544b061
Mar 11, 2016
- sPuReMD: fixes to ICHOL_PAR. · 81fb1bae
  Kurt A. O'Hearn authored 9 years ago
  
  81fb1bae
Feb 24, 2016
- sPuReMD: fix diagonal scaling in factorization. · 09df8f08
  Kurt A. O'Hearn authored 9 years ago
  
  09df8f08
Feb 17, 2016
- sPuReMD: code cleanup. · 583dead3
  Kurt A. O'Hearn authored 9 years ago
  
  583dead3
- sPuReMD: fix ICHOL_PAR (diagonal scaling issues). · 32204c36
  Kurt A. O'Hearn authored 9 years ago
  
  32204c36
Feb 16, 2016
- sPuReMD: fix iteration matrix used in Jacobi iteration. · 1cd5b9df
  Kurt A. O'Hearn authored 9 years ago
  
  1cd5b9df
Feb 02, 2016
- sPuReMD: fix transpose in ICHOL_PAR. · b0c69a7a
  Kurt A. O'Hearn authored 9 years ago
  
  b0c69a7a
- sPuReMD: add parallel ICHOL algorithm. · f3779f8e
  Kurt A. O'Hearn authored 9 years ago
  
  f3779f8e
Feb 01, 2016
- sPuReMD: change Jacobi Iter starting value. · 9d59a1ac
  Kurt A. O'Hearn authored 9 years ago
  
  9d59a1ac
Jan 29, 2016
- sPuReMD: fix matvec. Update params. · fed27454
  Kurt A. O'Hearn authored 9 years ago
  
  fed27454
Jan 28, 2016
- Minor fixes. · 90e2af75
  Kurt A. O'Hearn authored 9 years ago
  
  90e2af75
- Autoformat. · a5f19193
  Kurt A. O'Hearn authored 9 years ago
  
  a5f19193
- sPuReMD: fix Jacobi iteration. Other minor fixes. · 0eb092a3
  Kurt A. O'Hearn authored 9 years ago
  
  0eb092a3