Skip to content
GitLab
Explore
Sign in
Primary navigation
Search or go to…
Project
S
SNPhylo
Manage
Activity
Members
Labels
Plan
Issues
Issue boards
Milestones
Requirements
Code
Merge requests
Repository
Branches
Commits
Tags
Repository graph
Compare revisions
Snippets
Locked files
Build
Pipelines
Jobs
Pipeline schedules
Test cases
Artifacts
Deploy
Releases
Package Registry
Container Registry
Model registry
Operate
Environments
Terraform modules
Monitor
Incidents
Service Desk
Analyze
Value stream analytics
Contributor analytics
CI/CD analytics
Repository analytics
Code review analytics
Issue analytics
Insights
Model experiments
Help
Help
Support
GitLab documentation
Compare GitLab plans
Community forum
Contribute to GitLab
Provide feedback
Keyboard shortcuts
?
Snippets
Groups
Projects
Show more breadcrumbs
Gallant, Jason
SNPhylo
Graph
6868887586e84f5bf68316a794e7f40f6d6dff59
Select Git revision
Branches
1
master
default
protected
1 result
You can move around the graph by using the arrow keys.
Begin with the selected commit
Created with Raphaël 2.2.0
24
Nov
18
Jun
5
Oct
1
Sep
4
Feb
3
Apr
28
Nov
1
Jul
30
Apr
22
16
Jan
19
Dec
11
Oct
10
9
1
23
Aug
22
Jul
20
Jun
19
18
Fix for Bootstrapping- Edge Case Where SNPhylo outputs interleaved tree
master
master
fixed typo on li. 294 of snpphylo.sh } > ]
Add a code to write sample BS trees
Snphylo.template is replaced by snphylo.sh
Added -t option to use multicores
Update remove_low_depth_genotype_data.py
Solve the error, "Error in snpgdsVCF2GDS(vcf.file, gds.file, method = "biallelic.only", : unused argument (option = snpgds.option)", in the new version of SNPRelate.
Update generate_snp_sequence.R
Change the method to install a few packages
Modify documents for the new verion of the pipeline
Add new option '-r' to skip the step removing low quality data; Modify setup.sh for gdsfmt and SNPRelate packages no more supported by CRAN; Fix bugs
Debugged
Add an option '-a' to determine the autosome number and '-A' to enable the multiple alignment process
Corrected typo error
Debugged
Update documents.
Add functions to do bootstrapping analysis and to make a tree image file in PNG format
Minor revision of convert_simple_to_hapmap.py
Change version number
Add a warning message for short sequences < 2500 bp
Debugged
debugged
Modify to process SNP data which does not have DP column.
Add new function to use a simple SNP data file.
Add new script to convert a simple SNP data file to HapMap file.
Modify a message
Add the installation example for the Ubuntu
Update the install files
Modify install files
Modify scripts
Modify install files
Change the README.rst file
Rename README file to README.rst
Add a document about installation of SNPhylo on OS X
Add a document directory
Add COPYING file
Rename README.md to README
The first commit of SNPhylo files
first commit
Loading