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Created with Raphaël 2.2.024Nov18Jun5Oct1Sep4Feb3Apr28Nov1Jul30Apr2216Jan19Dec11Oct109123Aug22Jul20Jun1918Fix for Bootstrapping- Edge Case Where SNPhylo outputs interleaved treemastermasterfixed typo on li. 294 of snpphylo.sh } > ]Add a code to write sample BS treesSnphylo.template is replaced by snphylo.shAdded -t option to use multicoresUpdate remove_low_depth_genotype_data.pySolve the error, "Error in snpgdsVCF2GDS(vcf.file, gds.file, method = "biallelic.only", : unused argument (option = snpgds.option)", in the new version of SNPRelate.Update generate_snp_sequence.RChange the method to install a few packagesModify documents for the new verion of the pipelineAdd new option '-r' to skip the step removing low quality data; Modify setup.sh for gdsfmt and SNPRelate packages no more supported by CRAN; Fix bugsDebuggedAdd an option '-a' to determine the autosome number and '-A' to enable the multiple alignment processCorrected typo errorDebuggedUpdate documents.Add functions to do bootstrapping analysis and to make a tree image file in PNG formatMinor revision of convert_simple_to_hapmap.pyChange version numberAdd a warning message for short sequences < 2500 bpDebuggeddebuggedModify to process SNP data which does not have DP column.Add new function to use a simple SNP data file.Add new script to convert a simple SNP data file to HapMap file.Modify a messageAdd the installation example for the UbuntuUpdate the install filesModify install filesModify scriptsModify install filesChange the README.rst fileRename README file to README.rstAdd a document about installation of SNPhylo on OS XAdd a document directoryAdd COPYING fileRename README.md to READMEThe first commit of SNPhylo filesfirst commit