sPuReMD: split into library and driver for optimization integration (NSGA-II)....
sPuReMD: split into library and driver for optimization integration (NSGA-II). Fix bug with interaction lists being allocated for hydrogen bonds when no hydorgen atoms present. Fix minimum allocation size of 3-body lists (uncovered with small lithium geometries). Refactor naming of conflicting data structures with NSGA-II. Update .gitignore.
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- .gitignore 6 additions, 0 deletions.gitignore
- ar-lib 270 additions, 0 deletionsar-lib
- sPuReMD/Makefile.am 9 additions, 11 deletionssPuReMD/Makefile.am
- sPuReMD/aclocal.m4 65 additions, 0 deletionssPuReMD/aclocal.m4
- sPuReMD/configure.ac 3 additions, 2 deletionssPuReMD/configure.ac
- sPuReMD/src/allocate.c 7 additions, 7 deletionssPuReMD/src/allocate.c
- sPuReMD/src/allocate.h 3 additions, 3 deletionssPuReMD/src/allocate.h
- sPuReMD/src/analyze.c 23 additions, 23 deletionssPuReMD/src/analyze.c
- sPuReMD/src/analyze.h 6 additions, 6 deletionssPuReMD/src/analyze.h
- sPuReMD/src/bond_orders.c 33 additions, 33 deletionssPuReMD/src/bond_orders.c
- sPuReMD/src/bond_orders.h 11 additions, 11 deletionssPuReMD/src/bond_orders.h
- sPuReMD/src/charges.c 11 additions, 11 deletionssPuReMD/src/charges.c
- sPuReMD/src/charges.h 1 addition, 1 deletionsPuReMD/src/charges.h
- sPuReMD/src/control.c 3 additions, 3 deletionssPuReMD/src/control.c
- sPuReMD/src/driver.c 53 additions, 0 deletionssPuReMD/src/driver.c
- sPuReMD/src/forces.c 15 additions, 15 deletionssPuReMD/src/forces.c
- sPuReMD/src/forces.h 2 additions, 2 deletionssPuReMD/src/forces.h
- sPuReMD/src/four_body_interactions.c 2 additions, 2 deletionssPuReMD/src/four_body_interactions.c
- sPuReMD/src/four_body_interactions.h 1 addition, 1 deletionsPuReMD/src/four_body_interactions.h
- sPuReMD/src/geo_tools.c 1 addition, 1 deletionsPuReMD/src/geo_tools.c
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