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Commit 44f913da authored by Hijazi, Hussein's avatar Hijazi, Hussein
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...@@ -9,6 +9,7 @@ The following file contains information about the simulated and empirical data, ...@@ -9,6 +9,7 @@ The following file contains information about the simulated and empirical data,
Simulation Study Simulation Study
———————————————— ————————————————
1- Generate model trees using r8s. 1- Generate model trees using r8s.
2- Remove branch lengths of model trees using remove-bl.R 2- Remove branch lengths of model trees using remove-bl.R
...@@ -36,9 +37,10 @@ Rscript get_inferred_gene_trees.R ...@@ -36,9 +37,10 @@ Rscript get_inferred_gene_trees.R
Rscript get_inferred_gene_trees_with_outgroup.R Rscript get_inferred_gene_trees_with_outgroup.R
FastNet FastNet
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Arguments: Arguments:
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path=\< current path \> path=\< current path \>
...@@ -60,7 +62,8 @@ genetrees=1000 ...@@ -60,7 +62,8 @@ genetrees=1000
sample_size=1 sample_size=1
How to run FastNet?
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1. Run ASTRAL to get guide tree: 1. Run ASTRAL to get guide tree:
sh run_ASTRAL.sh $path $taxa $height $migration $theta $numRep sh run_ASTRAL.sh $path $taxa $height $migration $theta $numRep
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