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Commit 7f835127 authored by Hijazi, Hussein's avatar Hijazi, Hussein
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Title: The scalability of phylogenomic methods for inferring phylogenetic networks: a performance study utilizing multi-locus datasets and phylogenetic networks with a single reticulation Title: FastNet: Fast and accurate inference of
phylogenetic networks using large-scale genomic
sequence data
Authors: Hussein A. Hejase & Natalie VandePol & Gregory A. Bonito & Patrick P. Edger & Kevin J. Liu Authors: Hussein A. Hejase & Natalie VandePol & Gregory A. Bonito & Patrick P. Edger & Kevin J. Liu
...@@ -8,7 +10,7 @@ The following file contains information about the simulated and empirical data, ...@@ -8,7 +10,7 @@ The following file contains information about the simulated and empirical data,
Simulation Study Simulation Study
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1- Generate model trees using r8s. 1- Generate model trees using r8s.
...@@ -38,11 +40,11 @@ Rscript get_inferred_gene_trees_with_outgroup.R ...@@ -38,11 +40,11 @@ Rscript get_inferred_gene_trees_with_outgroup.R
FastNet FastNet
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Arguments: Arguments:
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path=\< current path \> path=\< current path \>
...@@ -66,7 +68,7 @@ sample_size=1 ...@@ -66,7 +68,7 @@ sample_size=1
How to run FastNet? How to run FastNet?
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1. Run ASTRAL to get guide tree: 1. Run ASTRAL to get guide tree:
sh run_ASTRAL.sh $path $taxa $height $migration $theta $numRep sh run_ASTRAL.sh $path $taxa $height $migration $theta $numRep
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