Commits · 4f1c2678c524cd9a7dd74c1eb41dafa5eb7ea8f3 · Ashbaugh, Ryan / Fluorescence Video Analysis · GitLab

Snippets Groups Projects

Nov 18, 2021
- Add LICENSE · 4f1c2678
  Ashbaugh, Ryan authored 3 years ago
  
  4f1c2678
Jun 24, 2021
- Merge branch 'improved-architecture' · 834cfdc5
  Ashbaugh, Ryan authored 3 years ago
  
  834cfdc5
- changed title · c25c70de
  Ashbaugh, Ryan authored 3 years ago
  
  c25c70de
- pdf with instructions · 1ae5afae
  Ashbaugh, Ryan authored 3 years ago
  
  1ae5afae
- save full output · bdead9cf
  Ashbaugh, Ryan authored 3 years ago
  
  bdead9cf
- update readme · 0b7eb517
  Ashbaugh, Ryan authored 3 years ago
  
  0b7eb517
- deleted old files · b69a05af
  Ashbaugh, Ryan authored 3 years ago
  
  b69a05af
Jun 12, 2021
- semicolons for table row setup · 273ea785
  Ashbaugh, Ryan authored 3 years ago
  
  273ea785
- save normalized roi traces · 5b4f7720
  Ashbaugh, Ryan authored 3 years ago
  
  5b4f7720
- complete file for doing manual processing. select save file for all info csv and summary file · 66ec3e65
  Ashbaugh, Ryan authored 3 years ago
  
  66ec3e65
- file for calculating the ROI means from the sequence · 4133e369
  Ashbaugh, Ryan authored 3 years ago
  
  4133e369
- file for creating a mask of the rois from the .png made by manually labeling rois · 2bf82a65
  Ashbaugh, Ryan authored 3 years ago
  
  2bf82a65
Jun 11, 2021
- create mask for manual labels · 8612dec4
  Ashbaugh, Ryan authored 3 years ago
  
  8612dec4
- file for building mask of ROIs from manual method · 6a26f15e
  Ashbaugh, Ryan authored 3 years ago
  
  6a26f15e
- File for working with manually labeled image ROIs · d148772e
  Ashbaugh, Ryan authored 3 years ago
  
  d148772e
- changed trailing backslash to filesep for cross platform functionality · d288c52f
  Ashbaugh, Ryan authored 3 years ago
  
  d288c52f
May 02, 2021
- function for median filtering image sequence and overlaying making overlay video · fae8154e
  Ashbaugh, Ryan authored 3 years ago
  
  fae8154e
- median filter sequence · 496891d7
  Ashbaugh, Ryan authored 3 years ago
  
  496891d7
- improved instructions · 99f58f36
  Ashbaugh, Ryan authored 3 years ago
  
  99f58f36
- instructions for how to use · 64d4f14a
  Ashbaugh, Ryan authored 3 years ago
  
  64d4f14a
- updates names · 98c1b89e
  Ashbaugh, Ryan authored 3 years ago
  
  98c1b89e
- better message · cc5baa0c
  Ashbaugh, Ryan authored 3 years ago
  
  cc5baa0c
- add grid · e0a5bc8f
  Ashbaugh, Ryan authored 3 years ago
  
  e0a5bc8f
- normalize to specific input baseline · dcee733b
  Ashbaugh, Ryan authored 3 years ago
  
  dcee733b
- seperate file for loading the roi file and analyzing · 3bd5d31f
  Ashbaugh, Ryan authored 3 years ago
  
  3bd5d31f
- get input from the user for which frames to use as baseline and stim · 13a151e3
  Ashbaugh, Ryan authored 3 years ago
  
  13a151e3
- function to plot roi traces · 514d26ee
  Ashbaugh, Ryan authored 3 years ago
  
  514d26ee
- function for getting roi centroids · 8ee74317
  Ashbaugh, Ryan authored 3 years ago
  
  8ee74317
- function to wrap all roi detection into one place. output is binary roi image · 23068479
  Ashbaugh, Ryan authored 3 years ago
  
  23068479
- function for creating output video · 2fcd5a9b
  Ashbaugh, Ryan authored 3 years ago
  
  2fcd5a9b
- new file for overlaying roi image · 6fcd03e6
  Ashbaugh, Ryan authored 3 years ago
  
  6fcd03e6
- fixed name error · fee52d83
  Ashbaugh, Ryan authored 3 years ago
  
  fee52d83
- function for calculating the thresholded absolute laplacian · a20ec238
  Ashbaugh, Ryan authored 3 years ago
  
  a20ec238
- use new laplacian file · 083409a6
  Ashbaugh, Ryan authored 3 years ago
  
  083409a6
- further updates to main file · 5c1f45c0
  Ashbaugh, Ryan authored 3 years ago
  
  5c1f45c0
- function for calculating laplacian of image · afe4e76a
  Ashbaugh, Ryan authored 3 years ago
  
  afe4e76a
- file for getting brightest image and updated main file · 67ba7336
  Ashbaugh, Ryan authored 3 years ago
  
  67ba7336
- file to get the trace for the mean brightness of each frame in sequence · bfcc01c5
  Ashbaugh, Ryan authored 3 years ago
  
  bfcc01c5
- function for loading sequence of images · 95d0a0bb
  Ashbaugh, Ryan authored 3 years ago
  
  95d0a0bb
May 01, 2021
- change directory name · c397f323
  Ashbaugh, Ryan authored 3 years ago
  
  c397f323