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Fluorescence Video Analysis
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Ashbaugh, Ryan
Fluorescence Video Analysis
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4f1c2678c524cd9a7dd74c1eb41dafa5eb7ea8f3
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2
devel
master
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protected
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Created with Raphaël 2.2.0
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23
Add LICENSE
master
master
Included word doc with additional instructions
devel
devel
Merge branch 'improved-architecture'
changed title
pdf with instructions
save full output
update readme
deleted old files
semicolons for table row setup
save normalized roi traces
complete file for doing manual processing. select save file for all info csv and summary file
file for calculating the ROI means from the sequence
file for creating a mask of the rois from the .png made by manually labeling rois
create mask for manual labels
file for building mask of ROIs from manual method
File for working with manually labeled image ROIs
changed trailing backslash to filesep for cross platform functionality
function for median filtering image sequence and overlaying making overlay video
median filter sequence
improved instructions
instructions for how to use
updates names
better message
add grid
normalize to specific input baseline
seperate file for loading the roi file and analyzing
get input from the user for which frames to use as baseline and stim
function to plot roi traces
function for getting roi centroids
function to wrap all roi detection into one place. output is binary roi image
function for creating output video
new file for overlaying roi image
fixed name error
function for calculating the thresholded absolute laplacian
use new laplacian file
further updates to main file
function for calculating laplacian of image
file for getting brightest image and updated main file
file to get the trace for the mean brightness of each frame in sequence
function for loading sequence of images
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