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Tu, Ethan
PK_Optimizer
Commits
06304138
Commit
06304138
authored
4 years ago
by
Tu, Ethan
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# -*- coding: utf-8 -*-
"""
Spyder Editor
This is a temporary script file.
"""
import
pathlib
import
pkOptimizer
import
numpy
as
np
import
pytest
test0
=
[
100
,
14.2
,
1.2
,
0.25
]
test1
=
[
255
,
7.6
,
4
,
0
]
test2
=
[
-
255
,
7.6
,
4
,
0
]
test3
=
[
255
,
-
7.6
,
4
,
0
]
test4
=
[
255
,
7.6
,
-
4
,
0
]
test5
=
[
255
,
7.6
,
4
,
-
2
]
test6
=
[
12255
,
7.6
,
4
,
0
]
test7
=
[
255
,
2357.6
,
4
,
0
]
test8
=
[
255
,
7.6
,
2214
,
0
]
test9
=
[
255
,
7.6
,
4
,
17770
]
test10
=
[
0
,
0
,
0
,
0
]
test11
=
[
0
,
1
,
0
]
test12
=
[
0
,
1
]
test13
=
[
1
]
test14
=
[]
defaultGamma
=
np
.
array
([
0.
,
0.
,
0.
,
0.
,
0.
,
0.
,
0.605
,
1.981
,
3.65
,
5.312
,
6.796
,
8.012
,
8.928
,
9.548
,
9.893
,
10.
,
9.907
,
9.653
,
9.275
,
8.807
,
8.277
,
7.711
,
7.127
,
6.541
,
5.967
])
pk1
=
pkOptimizer
.
pkOptimizer
(
pathlib
.
Path
(
'
Data
'
).
absolute
())
assert
pk1
.
wd
==
pathlib
.
Path
(
'
Data
'
).
absolute
()
pk2
=
pkOptimizer
.
pkOptimizer
(
pathlib
.
Path
(
'
Data
'
).
absolute
())
def
test_pkOptimizer_init
():
#Test directory is same as one given
assert
pk1
.
wd
==
pathlib
.
Path
(
'
Data
'
).
absolute
()
def
test_pkOptimizer_getData_noFile
():
# Test if the function raises the exception if nonexisting file name is passed as parameter.
with
pytest
.
raises
(
ValueError
)
as
excinfo
:
pk1
.
getData
(
"
non-existing_file.txt
"
)
assert
"
file does not exist
"
in
str
(
excinfo
.
value
)
def
test_pkOptimizer_getData
():
#Test data is correctly red from .csv given
pk1
.
getData
(
'
CTPERF005_rest.csv
'
)
assert
pk1
.
time
[
1
]
==
2.0687260000000265
assert
pk1
.
aorta
==
[
0.0
,
3.0
,
16.0
,
89.0
,
240.0
,
348.0
,
413.0
,
345.0
,
226.0
,
127.0
,
72.0
,
42.0
]
assert
pk1
.
myo
==
[
44.0
,
46.0
,
51.0
,
51.0
,
51.0
,
59.0
,
72.0
,
78.0
,
84.0
,
91.0
,
91.0
,
84.0
]
pk2
.
getData
(
'
CTPERF005_stress.csv
'
)
assert
pk2
.
time
[
1
]
==
2.060608000000002
assert
pk2
.
aorta
==
[
0.0
,
79.0
,
197.0
,
235.0
,
253.0
,
200.0
,
127.0
,
70.0
,
41.0
,
35.0
,
36.0
,
44.0
]
assert
pk2
.
myo
==
[
62.0
,
61.0
,
69.0
,
91.0
,
97.0
,
102.0
,
104.0
,
104.0
,
100.0
,
95.0
,
92.0
,
88.0
]
def
test_pkOptimizer_gamma_Var
():
#Test our gamma curve is the same
for
i
in
range
(
len
(
pk2
.
gamma_var
())):
assert
pk2
.
gamma_var
()[
i
]
==
defaultGamma
[
i
]
def
test_pkOptimizer_MSE
():
#Test a bunch of cases for calculating MSE
assert
pk2
.
MSE
(
test0
)
==
8568.843
assert
pk2
.
MSE
(
test1
)
==
701.975
assert
pk2
.
MSE
(
test2
)
==
1000000
assert
pk2
.
MSE
(
test3
)
==
1000000
assert
pk2
.
MSE
(
test4
)
==
1000000
assert
pk2
.
MSE
(
test5
)
==
1000000
assert
pk2
.
MSE
(
test6
)
==
37556492.001
assert
pk2
.
MSE
(
test7
)
==
1000000
assert
pk2
.
MSE
(
test8
)
==
1000000
assert
pk2
.
MSE
(
test9
)
==
19287.583
assert
pk2
.
MSE
(
test10
)
==
1000000
assert
pk2
.
MSE
(
test11
)
==
1000000
assert
pk2
.
MSE
(
test12
)
==
1000000
assert
pk2
.
MSE
(
test13
)
==
1000000
assert
pk2
.
MSE
(
test14
)
==
1000000
def
test_pkOptimizer_funcFit
():
#Test if FuncFit outputs our optimized parameters for rest and stress state
popt1
=
pk1
.
inputFuncFit
(
test1
)
popt2
=
pk2
.
inputFuncFit
(
test1
)
for
i
in
range
(
4
):
assert
popt1
[
i
]
==
[
403.17
,
12.43
,
9.44
,
0.
][
i
]
for
i
in
range
(
4
):
assert
popt2
[
i
]
==
[
253.78
,
6.78
,
2.52
,
0.
][
i
]
\ No newline at end of file
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